Insertion junction: CLIP2.037048_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.037048
Chromosome:chromosome 1
Location:3308873
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g021300 (1 of 2) IPR016140 - Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTAGGATGGGCTGCTATCTACAACCCCCCTCCCCATTCCTTACGGGATTG
Internal bar code:TAGGAAATAAGCTCTAACTCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:88
LEAP-Seq percent confirming:36.3636
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GAGGTCAAGGTGGGGAACTG
Suggested primer 2:AAAGGAACTCGGCCAGACTG