Insertion junction: CLIP2.037223_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.037223
Chromosome:chromosome 3
Location:5810046
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g187950 SEE1 Putative splicing endonuclease positive effector; (1 of 3) K10706 - senataxin [EC:3.6.4.-] (SETX, ALS4) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACCCCGCCGGCCCTGGCCCCGGCCGCCGCCACCCGTGCCGCCCCCGCCC
Internal bar code:ATACTAAGATGGTTTAGTATGC

Confirmation - LEAP-Seq

LEAP-Seq distance:761
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:CTACAGCCGCAGCACTACTT
Suggested primer 2:GGGGGCAGCTGAAATTCTCT