Insertion junction: CLIP2.037275_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.037275
Chromosome:chromosome 14
Location:2634863
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g625350 MAE17 MATE efflux family protein; (1 of 3) PTHR11206:SF95 - MULTI ANTIMICROBIAL EXTRUSION FAMILY PROTEIN intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACTGTGACACGAGTTGGGGTGGCTGGCTGCCGTGCAGTTAGGGTGCAGT
Internal bar code:CACTGTCTTGTGTGGAACGAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:628
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGGGCTCTCGGGTGATTC
Suggested primer 2:GTGTGTGTGTGCGGTTGTAC