Insertion junction: CLIP2.037370_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.037370
Chromosome:chromosome 11
Location:2045715
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467759 PIC1,PIC1-2 (1 of 2) PTHR34548:SF2 - PROTEIN TIC 21, CHLOROPLASTIC; Similar to AtTic21/PIC1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTCGCCATCACACCCCGGCCCCCACATCCTGTGGCGCCAGCACGCACCT
Internal bar code:TGAAAGCTATTGTCCAGAAGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:381
LEAP-Seq percent confirming:62.5
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TTCCTGTCCACCTTCTTCGC
Suggested primer 2:ATCGGCCTTGAGGTTCCAAG