Insertion junction: CLIP2.037397_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.037397
Chromosome:chromosome 5
Location:2564928
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g239500 FAP38 (1 of 1) IPR000104//IPR009068 - Antifreeze protein, type I // S15/NS1, RNA-binding; Flagellar Associated Protein 38 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGCTGGGTACGTGGGGACGGAGGTCACAGAAAACAGGGCCTGACGCAGC
Internal bar code:GTTCATTTTTAGTGGTTCGCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1239
LEAP-Seq percent confirming:51.2195
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:20
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:GTCAGAGTTGCACCTTCCGA
Suggested primer 2:GGAGGTCAGCTTGGCAATCT