Insertion junction: CLIP2.037402_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.037402
Chromosome:chromosome 17
Location:5572828
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g739650 MAE1,MFT1 MATE efflux family protein; (1 of 5) PTHR11206//PTHR11206:SF94 - MULTIDRUG RESISTANCE PROTEIN // DNA-DAMAGE-INDUCIBLE PROTEIN F intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGAATTCGTGCCAATCGAGCAGCAGCAGGAAAAGCATTATTCATTCGTT
Internal bar code:TCTTGTCTATGACGTTTGTGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2397
LEAP-Seq percent confirming:52.8846
LEAP-Seq n confirming:55
LEAP-Seq n nonconfirming:49
LEAP-Seq n unique pos:104

Suggested primers for confirmation by PCR

Suggested primer 1:AAGGGGGTTCGTGCATTAGG
Suggested primer 2:GCTTGGTGGCTGTGTTGAAG