Insertion junction: CLIP2.037518_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.037518
Chromosome:chromosome 3
Location:3779981
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g169550 AOX2 Alternative oxidase; (1 of 2) PTHR31803:SF3 - ALTERNATIVE OXIDASE intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGTGAGTGAGCCGTCCTCCGGCCAGCCACCTAGCCAGCGTACCGTGTG
Internal bar code:GATGCGGGGCGAACCTTCCGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:3226
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:42
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:ATATACGCGCACAGCCTACC
Suggested primer 2:CGCCCTTGTCTAACACGACT