Insertion junction: CLIP2.037564_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.037564
Chromosome:chromosome 2
Location:5388565
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g113652 (1 of 2) PTHR24320:SF1 - 3-KETODIHYDROSPHINGOSINE REDUCTASE intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATGGGCCTGACTCCTGCCAATTCACCAACCCGCCAACCCCCTCCCCCTG
Internal bar code:GATATGGCTCGTCGCTAGGTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1313
LEAP-Seq percent confirming:10.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:CGGGTAACAGCACCAAGTCT
Suggested primer 2:GACCTCACATTCAGCCCACA