Insertion junction: CLIP2.037656_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.037656
Chromosome:chromosome 9
Location:2696227
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g391753 CDS
Cre09.g801023 gene_edge/mRNA_edge/3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGAGCCAAACAGTTGCACAGGCGCAGCGGGTGTGGCAGGTGACCGGCGC
Internal bar code:ATGACCCTATATGAGCTCTCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2256
LEAP-Seq percent confirming:55.1724
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCTGGTCAGCCCTTTCAG
Suggested primer 2:CCCCTTCTCCCTAGAGCTGT