Insertion junction: CLIP2.037707_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.037707
Chromosome:chromosome 5
Location:1601341
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g800536 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGCGCAACGCAGGCCCACAGCTGCTGCAGCCACGTCCTCGCCTGCGCA
Internal bar code:TTAGTCAAGATTATTTGTCACA

Confirmation - LEAP-Seq

LEAP-Seq distance:719
LEAP-Seq percent confirming:60.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:AACACATGGGCGCCAGATAA
Suggested primer 2:CTAGTACTCATGGGCGCCAG