Insertion junction: CLIP2.037707_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.037707
Chromosome:chromosome 5
Location:1601342
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g800536 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGGCAGCGGCGCCGCCAGTGACGGACGCGGGCTTCATGCTGGGGGACCG
Internal bar code:TTAGTCAAGATTATTTGTCACA

Confirmation - LEAP-Seq

LEAP-Seq distance:569
LEAP-Seq percent confirming:10.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:CTAGTACTCATGGGCGCCAG
Suggested primer 2:AACACATGGGCGCCAGATAA