Insertion junction: CLIP2.038114_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.038114
Chromosome:chromosome 2
Location:5782926
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g116950 HDA1 RPD3/HDA1 type histone deacetylase; (1 of 2) 3.5.1.4 - Amidase / Acylase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCACATCTTCGAGTCGGACCCGCGCGTGTTGTTCATCAGCGTGCATCAG
Internal bar code:TGAGGAGTTCCTTTTGGCGTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:521
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:CGTCTCCGTCACGTAGCTAC
Suggested primer 2:GGTCGTAAGTTCCAGCCCAA