Insertion junction: CLIP2.038143_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.038143
Chromosome:chromosome 5
Location:309996
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g800514 (1 of 1) PTHR19878//PTHR19878:SF8 - AUTOPHAGY PROTEIN 16-LIKE // AUTOPHAGIC-RELATED PROTEIN 16.1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTTGCCGGCCGGAGGGGGAGTTGTAGTTACCAGAACCAACGGAAACGAG
Internal bar code:TTTTGTTGTTGCCTCCCGGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:421
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:GCTAGCAGCTGATGAGGGAG
Suggested primer 2:TGATTGTAAACGCCCCTCCC