Insertion junction: CLIP2.038143_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.038143
Chromosome:chromosome 5
Location:309997
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g800514 (1 of 1) PTHR19878//PTHR19878:SF8 - AUTOPHAGY PROTEIN 16-LIKE // AUTOPHAGIC-RELATED PROTEIN 16.1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTCATGGCGGATCCGTTTCGCATCGGTTGGAAAGCACGTGTCTAAGCAG
Internal bar code:TTTTGTTGTTGCCTCCCGGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:299
LEAP-Seq percent confirming:39.6552
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:35
LEAP-Seq n unique pos:58

Suggested primers for confirmation by PCR

Suggested primer 1:TGATTGTAAACGCCCCTCCC
Suggested primer 2:GCTAGCAGCTGATGAGGGAG