Insertion junction: CLIP2.038169_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.038169
Chromosome:chromosome 9
Location:3451580
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00132499

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGCACCGCTGCTTGCCTCGCTCTGTGTGTGCCCTAGACTTAGAAATGAA
Internal bar code:TGTGAAGGCATCACCTCAGGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:579
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:ATCCCCGGTCATAGGTTGGA
Suggested primer 2:TTGGCGTACAGGATTGTGCT