Insertion junction: CLIP2.038191_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.038191
Chromosome:chromosome 3
Location:7699925
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g203730 DEGO1,DEG12 Inactive Deg protease; (1 of 4) PTHR22939//PTHR22939:SF83 - SERINE PROTEASE FAMILY S1C HTRA-RELATED // PROTEASE DO-LIKE 2, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCGTATACATGGCGGGTGCATTCTCGCACAGATTTACACACAGAGATCC
Internal bar code:GGACGTATCACACAACAGGTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1980
LEAP-Seq percent confirming:97.1429
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:CATGGTAATCCGTCGCCGTA
Suggested primer 2:GAGCCGCACTGCATTTTAGG