Insertion junction: CLIP2.038242_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.038242
Chromosome:chromosome 9
Location:3659422
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g397142 ADF1,TRP15 (1 of 6) PTHR10117 - TRANSIENT RECEPTOR POTENTIAL CHANNEL; Acid-induced Ca transient receptor channel intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGTGTGCATGTGTGTGGCTGTGCCATGTGTTGCGAATCTTGCGATTATT
Internal bar code:AGATGTCCTTCCAAGAGGGTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:171
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CATGCCAAACAAACTGCCGA
Suggested primer 2:ATCTTGGCTAGAGCGTGTCG