Insertion junction: CLIP2.038299_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.038299
Chromosome:chromosome 4
Location:3276553
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g226750 (1 of 10) PTHR31867:SF1 - EXPANSIN-A1-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGGGTCGGGCGATAGGTGGGTCGGGCGCGTCGCCAGCGATGTGGGTCGG
Internal bar code:ATGTAACGTTGTAGCATACACA

Confirmation - LEAP-Seq

LEAP-Seq distance:2453
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:108
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:108

Suggested primers for confirmation by PCR

Suggested primer 1:CTGCCTGTGGTGCTACTTCA
Suggested primer 2:CATCGAAGTGCTGCATGTCG