Insertion junction: CLIP2.038435_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.038435
Chromosome:chromosome 3
Location:205326
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g144204 (1 of 2) PTHR10219 - GLYCOLIPID TRANSFER PROTEIN-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCCTGGCCCCAGTTGGGTGCGCACCAGCGCCCACACTTGGCGACCGGCT
Internal bar code:TCAACTTAAACTGTGTGGTCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:567
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCGCCTTCCTACATGGTC
Suggested primer 2:CAGTTGAGTCGGTCCCCTTC