Insertion junction: CLIP2.038466_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.038466
Chromosome:chromosome 2
Location:4326546
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g105000 (1 of 3) PTHR11207//PTHR11207:SF7 - RIBONUCLEASE III // SUBFAMILY NOT NAMED 3'UTR
Cre02.g105026 (1 of 70) PF07282 - Putative transposase DNA-binding domain (OrfB_Zn_ribbon) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTCCTGGGGGGCTTCGGCCCCCCCCTGGAACGCTGCGCTGGGGGGGCTC
Internal bar code:CGGGTCTATTACGCTGTCGACC

Confirmation - LEAP-Seq

LEAP-Seq distance:4792
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:77
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:77

Suggested primers for confirmation by PCR

Suggested primer 1:GCCAATAGTAGGTCCGAGCC
Suggested primer 2:CATCTCATGACACCCGCAGT