Insertion junction: CLIP2.038478_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.038478
Chromosome:chromosome 11
Location:3380198
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g477000 SNRK2D snRK1 family in Chlamydomonas, subgroup 2; (1 of 41) IPR000719//IPR011009 - Protein kinase domain // Protein kinase-like domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTTGCGACACAACGATGCACACAACGCACACAACGAACATAACTTGCTA
Internal bar code:GAACTCTCCGTCTGGGTGCCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:647
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:GGCAGCTTTAGGGTTGGAGT
Suggested primer 2:TGCAAAAGAGCGAGGAGGAG