Insertion junction: CLIP2.038605_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.038605
Chromosome:chromosome 12
Location:5687658
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g532050 (1 of 1) PF00069//PF04564//PF07714//PF12796 - Protein kinase domain (Pkinase) // U-box domain (U-box) // Protein tyrosine kinase (Pkinase_Tyr) // Ankyrin repeats (3 copies) (Ank_2) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGTCCCTCGCTATCCATACAGTCGTCACACACGGCGGCTCGCTGTACGC
Internal bar code:CATGCTGAGTGTATGGTGAGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:901
LEAP-Seq percent confirming:41.1765
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CGGTCTCGTCCATCTCCATG
Suggested primer 2:CGTACACCAGAATGCCCTGT