Insertion junction: CLIP2.038671_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.038671
Chromosome:chromosome 10
Location:6169652
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g462500 PUS16 (1 of 1) 5.4.99.42 - tRNA pseudouridine(31) synthase; RNA pseudouridine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAGTTCTGACCGATATCTCAACAACCACCACCACCACCACCCCTGCCTC
Internal bar code:CAATCTCTATCGTGGATGCAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:514
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TGTACATTTCCGCCCTCACC
Suggested primer 2:AGAACTCCTCTGCAATGGCC