Insertion junction: CLIP2.038721_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.038721
Chromosome:chromosome 4
Location:2479452
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g222000 (1 of 2) PTHR22847//PTHR22847:SF459 - WD40 REPEAT PROTEIN // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGTTTTAGGGTTTAGGGGTGGGGAACGGTTTATGTATGTACGGCGTGTG
Internal bar code:GATACACCGCGTAAGTTTTTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:155
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CAGTAGCCAGTCTGTGTGGG
Suggested primer 2:GTCCCAGTCTGGTTCCACAG