Insertion junction: CLIP2.038728_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.038728
Chromosome:chromosome 17
Location:2415610
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g714500 HTA33,NCG10,HTA1 Histone H2A; (1 of 30) K11251 - histone H2A (H2A) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTATGAAGTTGGGGTTCTTGAAGAACGGGCTTGAGGGTTTGAAATGTG
Internal bar code:ATGTTTTTCCTGGGTAGTTAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:4223
LEAP-Seq percent confirming:98.6842
LEAP-Seq n confirming:75
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:76

Suggested primers for confirmation by PCR

Suggested primer 1:GCTTAGCCCGAGGTGAACTT
Suggested primer 2:AACTAGAAACCCAAGCCCGG