Insertion junction: CLIP2.038946_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.038946
Chromosome:chromosome 10
Location:587606
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g801104 (1 of 1) IPR000104//IPR003072//IPR004333 - Antifreeze protein, type I // Orphan nuclear receptor, NOR1 type // Transcription factor, SBP-box CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGCTGGTGGAGCTTGCGGCCGAGCAGGTGCTGATGGGGCAGCAGCGGCA
Internal bar code:GGGCCCGTCGGTTGCAATTCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:231
LEAP-Seq percent confirming:6.25
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CCAGTACCATGGGGAGAGGA
Suggested primer 2:GGACATGGTGCTGCAGTAGT