Insertion junction: CLIP2.038969_4

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.038969
Chromosome:chromosome 15
Location:829768
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre15.g640400 CLR4,OPR98,NCC2 Nuclear Control of Chloroplast 2 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCAGAAGCAAAGTGCCGCACGCGGCTTTCTGGTTGGCGGCCTTCCTCCCG
Internal bar code:TTCTCTTCCTCTACACCTCTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2525
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCTGCAGGGGATGAGAAA
Suggested primer 2:GGTGAGAAGCAAAGTCCCGA