Insertion junction: CLIP2.039098_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.039098
Chromosome:chromosome 10
Location:2771831
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g801135 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCGAAACATGCTTGCATGGTGCACTCGTTCTTATCTAGCGCCGCTATCA
Internal bar code:TTTGTATTTAAAGGGTTTGTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1187
LEAP-Seq percent confirming:4.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:24
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:GGTGAAGGTGAACGGCAAAC
Suggested primer 2:GGTCAGCGCATATGCTCTCT