Insertion junction: CLIP2.039099_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.039099
Chromosome:chromosome 5
Location:3331739
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g232500 FXL8 (1 of 2) IPR000014//IPR011990 - PAS domain // Tetratricopeptide-like helical domain; FixL-like PAS domain protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGGCTGGCGACTTGGCGCCCTCACTTCAGGTGCGTGCGCAACCCACACC
Internal bar code:CAAACGATGTATAGTCGAGGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:216
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:ACATGCGACCAACTCGACAT
Suggested primer 2:ACGCTGGTCCAGTAGTTGTG