Insertion junction: CLIP2.039261_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.039261
Chromosome:chromosome 6
Location:1100293
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g257600 FA1 (1 of 4) PF13516 - Leucine Rich repeat (LRR_6); Flagellar Autonomy Protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGGTGCTGCAGCCCCGCCGCCGCTGCCACGCCACTGCCGGCCGCAGGCG
Internal bar code:CTTACCCTCTTAAAACTCTAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1885
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:GCTAGGTGCGAATGATTGCG
Suggested primer 2:GGAGATGGTGATGTTGGCCA