Insertion junction: CLIP2.039352_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.039352
Chromosome:chromosome 1
Location:2542347
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g015050 AGK1 (1 of 1) IPR006569//IPR017956//IPR020478 - CID domain // AT hook, DNA-binding motif // AT hook-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACCCCAGAGCTCCTATTGTCCAGAAGGCGGCAGCCGCCTCGGCCCCCAC
Internal bar code:TCTATTAGTTACGCTTGTTGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:395
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:CGTTTCTGTGCCTTGGTTGG
Suggested primer 2:TTGCTTTAGCGGCATCAGGA