Insertion junction: CLIP2.039399_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.039399
Chromosome:chromosome 9
Location:3839407
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g801034 (1 of 1) K08736 - DNA mismatch repair protein MSH3 (MSH3) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGGGAGTCATTGCTCGTAGTTGGGGTGTCCGTGGTGCCTAGCTGCCGC
Internal bar code:TAGTATGCTAGCCAATCGTGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:686
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:TGTACGGGGATGGAGTGAGT
Suggested primer 2:GCATGTGTGTGTGTGTGCAT