Insertion junction: CLIP2.039424_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.039424
Chromosome:chromosome 4
Location:1974219
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g218900 (1 of 2) PTHR10887//PTHR10887:SF333//PTHR13779//PTHR13779:SF20 - DNA2/NAM7 HELICASE FAMILY // SUBFAMILY NOT NAMED // HOLLIDAY JUNCTION DNA HELICASE RUVB-RELATED // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGTGCGTGCTACCCTGCCCGACACCACAGCACCTGCACTAATCGAAAGC
Internal bar code:TAGCAGTTAATTTGCATATCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1859
LEAP-Seq percent confirming:46.1538
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:GCAGGTGGGAGAGAGTTGAC
Suggested primer 2:TGAAACTGAGGCTGCAGAGG