Insertion junction: CLIP2.039477_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.039477
Chromosome:chromosome 9
Location:5276066
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g407200 POD1 Putative all-trans-retinol 13%252C14-reductase; (1 of 3) 5.2.1.13 - Prolycopene isomerase / CRTISO CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGTGTTTTGCACACATGCGCATGCTGCATGTGTTGCTTGTGTGAAGTTT
Internal bar code:ATCTGCTTATATATTTTATTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:179
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:CCACACACGACGGGTCTAAA
Suggested primer 2:GAGCTCCACGTATAACCGGG