Insertion junction: CLIP2.039492_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.039492
Chromosome:plastome
Location:128177
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802317 atpH,ChreCp053,2717044 ATPase III subunit; (1 of 1) K02110 - F-type H+-transporting ATPase subunit c (ATPF0C, atpE) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCGTAGCTGCTGCTTCTGTTGTATCTGCTGGTCTTGCTGTTGGTTTAGC
Internal bar code:TAATCGGAGTCGGACAATATAC

Confirmation - LEAP-Seq

LEAP-Seq distance:186
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:AAGGAAGCACCAAAGGCAGT
Suggested primer 2:CCTTCCGCAGAGGGTGAAAT