Insertion junction: CLIP2.039515_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.039515
Chromosome:chromosome 2
Location:5779161
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g116900 SETB,HDP1 Homolog of small hydrophilic plant seed proteins; (1 of 1) PTHR34671:SF1 - EM-LIKE PROTEIN GEA6 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACACACCTGGTATCCCTCGTGGCCCAGCTGCTCCTTCCTGCGCCCAGATC
Internal bar code:ACAACGTTGATATTCATACTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1104
LEAP-Seq percent confirming:38.7097
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:19
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCATCCCAAAACCCATCA
Suggested primer 2:ACCTCATTTGCAGCTCGGAA