Insertion junction: CLIP2.039534_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.039534
Chromosome:chromosome 9
Location:5610348
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g409801 (1 of 2) PTHR11373:SF4 - DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE SAMHD1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCCTGGGAATGGTGAAAACCGTGTGCCCCAACCCCTTCCACCAAATGCC
Internal bar code:CCATAGGGGCGTATGGTATGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:455
LEAP-Seq percent confirming:90.9091
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:AGGCGGTCATTGTTGCTGTA
Suggested primer 2:CAGGCATTCACACAACCTGC