Insertion junction: CLIP2.039565_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.039565
Chromosome:chromosome 10
Location:3797114
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g445650 SMC3 (1 of 1) K06669 - structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6) (SMC3, CSPG6); Structural Maintenance of Chromosomes protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGTTCACACGCAGGCGTCACCATCACCCACTTGATGTGCTTCTTGTCCA
Internal bar code:ACTTCGGGTGTCTAACGGGTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:5543
LEAP-Seq percent confirming:95.8333
LEAP-Seq n confirming:46
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:GATCATGCTGACCTCTCCGG
Suggested primer 2:GTCGAACAGGGTGTACTGCA