Insertion junction: CLIP2.039594_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.039594
Chromosome:chromosome 1
Location:560391
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g003463 (1 of 1) K08735 - DNA mismatch repair protein MSH2 (MSH2) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTTTGTACTGGTGTTTACAACTACCGTATCCCTTTCTCCCTCCCTCCCT
Internal bar code:GGCTGATAGACAACGAGATCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:119
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:CTACATACCCCGGCGTGTAC
Suggested primer 2:CTTCTCGCCTCATCCCATCC