Insertion junction: CLIP2.039605_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.039605
Chromosome:chromosome 17
Location:2508909
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g715700 VTC3,PPP44,PP2C5 (1 of 1) PF00481//PF07714 - Protein phosphatase 2C (PP2C) // Protein tyrosine kinase (Pkinase_Tyr); protein phosphatase 2C-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCAACCCTAGACGACCTGCGGGGCTGGAGGCTCGGAGCTCTCATTCGC
Internal bar code:AGTGGCCCGGCTAAGGGCCGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1460
LEAP-Seq percent confirming:26.6667
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:CTACTACCTGGCGAGGCATG
Suggested primer 2:CTGCCTGTGTTTTGCCTGAC