Insertion junction: CLIP2.039719_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.039719
Chromosome:chromosome 3
Location:4774863
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g177800 (1 of 10) PTHR31867//PTHR31867:SF1 - FAMILY NOT NAMED // EXPANSIN-A1-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGCAAGTGAGCGAACGACGGCGTGAATTTTGCGCGGGAAGGGGACGGGG
Internal bar code:TTCAAGCGATTGGTTAATCTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2160
LEAP-Seq percent confirming:77.7778
LEAP-Seq n confirming:42
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:54

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGAAAAGGCGCCATCTGC
Suggested primer 2:AGGTCCACGTGGTTCATGTC