Insertion junction: CLIP2.039719_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.039719
Chromosome:chromosome 3
Location:4774867
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g177800 (1 of 10) PTHR31867//PTHR31867:SF1 - FAMILY NOT NAMED // EXPANSIN-A1-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTGACGCTCCATTGTTCCCCCTTGCCCCTGTCCCCACCTCCTTGCGCTC
Internal bar code:CGAGCTGTGCTCGTTGCCCGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2665
LEAP-Seq percent confirming:94.3182
LEAP-Seq n confirming:83
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:88

Suggested primers for confirmation by PCR

Suggested primer 1:AGGTCCACGTGGTTCATGTC
Suggested primer 2:TTTGAAAAGGCGCCATCTGC