Insertion junction: CLIP2.039798_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.039798
Chromosome:chromosome 2
Location:5284510
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g112750 (1 of 19) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGGACACATGGCCGTTACCGTTGCCATATGCTTGCTGCAGACGCGACTG
Internal bar code:GTCGGACTTATGTAAACTCAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2904
LEAP-Seq percent confirming:68.75
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CGAGCGACTGAACACCATCA
Suggested primer 2:CATGGCCTTAATGCTGACGC