Insertion junction: CLIP2.039801_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.039801
Chromosome:chromosome 17
Location:5569255
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g739650 MAE1,MFT1 MATE efflux family protein; (1 of 5) PTHR11206//PTHR11206:SF94 - MULTIDRUG RESISTANCE PROTEIN // DNA-DAMAGE-INDUCIBLE PROTEIN F CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGCATGATCCTGGCTCTGGGGCTGGCGGCGGGTCACCGGGTGCTGCCG
Internal bar code:AGAGTTAAGAATTCTTTTTGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:334
LEAP-Seq percent confirming:82.3529
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CACTCCGTCACAACACCGTA
Suggested primer 2:CCAGATCTGCTTGCAGGTGA