Insertion junction: CLIP2.039828_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.039828
Chromosome:chromosome 2
Location:5966187
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g118125 5'UTR
Cre02.g118151 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGGATGTACTTGCGGACGCATGGATTGCTTTCCCCACTTGTATTCCTC
Internal bar code:ACTTGGTCAGATTTTTCTTGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2277
LEAP-Seq percent confirming:73.0337
LEAP-Seq n confirming:65
LEAP-Seq n nonconfirming:24
LEAP-Seq n unique pos:89

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGTCTGGCGACATTTCCT
Suggested primer 2:CCACGCTATGGGACGTACTC