Insertion junction: CLIP2.039894_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.039894
Chromosome:chromosome 11
Location:4049244
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g480700 (1 of 2) IPR000104//IPR000945 - Antifreeze protein, type I // Dopamine beta-hydroxylase-related intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCTCCGTGCTCTGTGGGCTGCTTCTAGGTCTTTGTCCAGTTGGGGTTGG
Internal bar code:GTGTTAGTCTGGCAACTTAAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:102
LEAP-Seq percent confirming:63.6364
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:ATTTGGTCCCGGATTGGTCC
Suggested primer 2:CATGCGTCTAGGTGGCTAGG