Insertion junction: CLIP2.039956_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.039956
Chromosome:chromosome 2
Location:5781713
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g116950 HDA1 RPD3/HDA1 type histone deacetylase; (1 of 2) 3.5.1.4 - Amidase / Acylase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCCTCCTCCCGGCCGCGGCTCACCGCGCGAGCTCCTCCTCTGTCGCGTG
Internal bar code:CCTAGTATGGAGTGCAGTCTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2191
LEAP-Seq percent confirming:37.5
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:AAATGTACGGCCAGGTCAGG
Suggested primer 2:TTGGGCTGGAACTTACGACC