Insertion junction: CLIP2.040033_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.040033
Chromosome:chromosome 1
Location:4610038
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g031850 ACD1 (1 of 1) PTHR10314//PTHR10314:SF70 - SER/THR DEHYDRATASE, TRP SYNTHASE // SUBFAMILY NOT NAMED; 1-aminocyclopropane-1-carboxylate deaminase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTGGACTTCTTCCCCCCTGTCTCTCTCACACACACGCACACACGCACGC
Internal bar code:ACTCTGCATATGGTTGGTGGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:3040
LEAP-Seq percent confirming:90.2439
LEAP-Seq n confirming:37
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:GGCCACACAATCCCTCATGA
Suggested primer 2:CAACTTTGCGCTCGTTGACA