Insertion junction: CLIP2.040093_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.040093
Chromosome:chromosome 3
Location:5511593
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g184900 (1 of 1) IPR027417//IPR029060 - P-loop containing nucleoside triphosphate hydrolase // PIN domain-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCTACTGTGGATGGCAACCTTGCAGGGGTGGGGCGTCCTGTCCTACCCT
Internal bar code:CAATATCAACATGACTTGAGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1309
LEAP-Seq percent confirming:26.6667
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:22
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:ATAGTACATGACCAGCGCGG
Suggested primer 2:CGACGACTCCGACTTCTACG