Insertion junction: CLIP2.040138_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.040138
Chromosome:chromosome 16
Location:4465872
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g667900 (1 of 11) IPR001471//IPR016177//IPR031112 - AP2/ERF domain // DNA-binding domain // AP2-like ethylene-responsive transcription factor; ANT-subfamily ortholog CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCCCGGCTTTGCATCCTGGCTCATCCGCTTTGGCGGCAGCGGCGGCGGC
Internal bar code:ATGGTCTCTCGGTCCGTTTTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1525
LEAP-Seq percent confirming:43.4783
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:CCGCCAACCAGCATTGAATC
Suggested primer 2:TTCGCTGGTTGTGACTGTCA